PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11512g01005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 350aa    MW: 40595.6 Da    PI: 5.352
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11512g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34591512103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Flkk++e+++d++++++isws++++sfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F
  Niben101Scf11512g01005.1  59 FLKKTFEMVDDPNTDSIISWSNTKTSFVVWDPHKFSIDLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGF 134
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               +kgkk+ll +ikr+k++
  Niben101Scf11512g01005.1 135 QKGKKHLLINIKRRKQQ 151
                               **************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5355148IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3755148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.63E-3455148IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3059148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-185982IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-18110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQEKMVTDD VINGGLQTVK EEPVLFLDEE DDIIGNSEFS SSLLPKPLEG LRDMGPPPFL  60
KKTFEMVDDP NTDSIISWSN TKTSFVVWDP HKFSIDLLPK HFKHNNFSSF IRQLNTYRFR  120
KIDSDRWEFA NEGFQKGKKH LLINIKRRKQ QYTHQGSGSA QSWLGSCNKD GIEAELEKLK  180
KDQNTLKMEV QSLKQQQEST ESYLATVKER LQNSETRQKY MVIFMAKAFK NPLFVQHLIE  240
KIKQRKTLDN GTLTKKRRLA SNPCDNQCDG HSLQVQEEFT TIKSEIQTLF SSDESNSPAD  300
EQKRNSQDMS SENYILWEKL MEDDMIYENG AENDKHHSDI VLELEDLIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-225714827129Heat shock factor protein 1
5d5v_B2e-225714827129Heat shock factor protein 1
5d5v_D2e-225714827129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606363.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotO809829e-86HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLM1D6701e-170M1D670_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000827521e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-87heat shock transcription factor A2